| Unclassified Program | CMake | Open source | 3.21.1* | gcc-11.2.0 | Install |
| Unclassified Program | GLPK | Open source | 5.0* | gcc-11.2.0 | Install |
| Unclassified Program | GNU Compilers | Open source | 11.2.0 11.1.09.4.08.5.04.8.5* | gcc-11.1.0 gcc-4.8.5gcc-11.1.0gcc-11.1.0binary* | Install |
| Unclassified Program | Gnuplot | Open source | 5.4.2* | gcc-11.2.0 | Install |
| Unclassified Program | HDF5 | Open source (academic) | 1.10.41.12.1* | gcc-11.2.0gcc-11.1.0* | Install |
| Unclassified Program | HTSlib | Open source | 1.13* | gcc-11.1.0 | Install |
| Unclassified Program | Intel Compilers | Commercial | 20152017*201820192020 | binary* | Install |
| Unclassified Program | Intel MPI | Commercial | 20152017*201820192020 | 20152017*201820192020 | Install |
| Unclassified Program | Java | Freeware | OpenJDK-1.8*OpenJDK-1.12OpenJDK-1.16 | binary* | Install |
| Unclassified Program | Julia | Open source | 1.0.5* | binary* | Install |
| Unclassified Program | NetCDF | Open source | netcdf-c-4.8.1netcdf-cxx-4.3.1netcdf-fortran-4.5.3 | gcc-11.2.0* | Install |
| Unclassified Program | OpenMPI | Open source | 4.1.1* | gcc-11.2.0* gcc-11.1.0gcc-9.4.0gcc-8.5.0 | Install |
| Unclassified Program | ParMETIS / METIS | | | | |
| Unclassified Program | PnetCDF | Open source | 1.12.2* | gcc-11.2.0* | Install |
| Unclassified Program | Relion | Open source | | | |
| Unclassified Program | Salmon | Freeware | 1.2.0* | conda*binary | Install |
| Unclassified Program | Singularity | 3-clause BSD License | 3.8.3* | go-1.17* | Install |
| Unclassified Program | USEARCH | Commercial | | | |
| Unclassified Program | XFdtd | Commercial | | | |
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| Aerospace Engineering | ANSYS | Commercial | | | |
| Aerospace Engineering | COMSOL | Commercial | | | |
| Aerospace Engineering | LS-DYNA | Commercial | | | |
| Aerospace Engineering | STAR-CCM+ | Commercial | | | |
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| Bioinformatics & Biology | AFNI | Gnu General Public License | 2021.9.1* | | Install |
| Bioinformatics & Biology | AMBER | Commercial | | | |
| Bioinformatics & Biology | AlphaFold | | | | |
| Bioinformatics & Biology | BLAST | | | conda | |
| Bioinformatics & Biology | BWA | | | conda | |
| Bioinformatics & Biology | BamTools | | | conda | |
| Bioinformatics & Biology | Bismark | | | conda | |
| Bioinformatics & Biology | Bowtie1 | | | conda | |
| Bioinformatics & Biology | Bowtie2 | | | conda | |
| Bioinformatics & Biology | Clustal W | | | conda | |
| Bioinformatics & Biology | Connectome | | | conda | |
| Bioinformatics & Biology | Cufflinks | | | conda | |
| Bioinformatics & Biology | DSI Studio | | | conda | |
| Bioinformatics & Biology | Desmond | | | conda | |
| Bioinformatics & Biology | FASTX-Toolkit | | | conda | |
| Bioinformatics & Biology | FSL | | | conda | |
| Bioinformatics & Biology | FastQC | | | conda | |
| Bioinformatics & Biology | FreeSurfer | | | conda | |
| Bioinformatics & Biology | GATK | | | conda | |
| Bioinformatics & Biology | GMAP | | | conda | |
| Bioinformatics & Biology | HISAT2 | | | conda | |
| Bioinformatics & Biology | HOMER | | | conda | |
| Bioinformatics & Biology | Kallisto | | | conda | |
| Bioinformatics & Biology | MIRA | | | conda | |
| Bioinformatics & Biology | MRIQC | | | conda | |
| Bioinformatics & Biology | MUSCLE | | | conda | |
| Bioinformatics & Biology | MuTect | | | conda | |
| Bioinformatics & Biology | Neuropointillist | | | conda | |
| Bioinformatics & Biology | Picard | | | conda | |
| Bioinformatics & Biology | RNA-SeQC | | | conda | |
| Bioinformatics & Biology | Rosetta | | | conda | |
| Bioinformatics & Biology | SAMtools | | | conda | |
| Bioinformatics & Biology | SIESTA | | | conda | |
| Bioinformatics & Biology | SRA Toolkit | | | conda | |
| Bioinformatics & Biology | STAR | | | conda | |
| Bioinformatics & Biology | STAR-Fusion | | | conda | |
| Bioinformatics & Biology | Schrodinger | | | conda | |
| Bioinformatics & Biology | Scipion | | | conda | |
| Bioinformatics & Biology | SnpEff | | | conda | |
| Bioinformatics & Biology | StringTie | | | conda | |
| Bioinformatics & Biology | Subread | | | conda | |
| Bioinformatics & Biology | TopHat | | | conda | |
| Bioinformatics & Biology | TrimGalore | | | conda | |
| Bioinformatics & Biology | Trimmomatic | | | conda | |
| Bioinformatics & Biology | Trinity | | | conda | |
| Bioinformatics & Biology | VCFtools | | | conda | |
| Bioinformatics & Biology | VarScan | | | conda | |
| Bioinformatics & Biology | bam2fastq | | | conda | |
| Bioinformatics & Biology | bcftools | | | conda | |
| Bioinformatics & Biology | bedtools | | | conda | |
| Bioinformatics & Biology | eXpress | | | conda | |
| Bioinformatics & Biology | fMRIPrep | | | conda | |
| Bioinformatics & Biology | metilene | | | conda | |
| Bioinformatics & Biology | miRDeep2 | | | conda | |
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| Chemical Engineering & Chemistry | CP2K | GNU General Public License | | | |
| Chemical Engineering & Chemistry | GAMESS | Proprietary freeware | | | |
| Chemical Engineering & Chemistry | GROMACS | Open source | | | |
| Chemical Engineering & Chemistry | Gaussian | Commercial | | | |
| Chemical Engineering & Chemistry | LAMMPS | Commercial | | | |
| Chemical Engineering & Chemistry | NAMD | Open source (academic) | | | |
| Chemical Engineering & Chemistry | NBO | Non-Commercial | | | |
| Chemical Engineering & Chemistry | NWChem | Open source | | | |
| Chemical Engineering & Chemistry | ORCA | | | | |
| Chemical Engineering & Chemistry | Q-Chem | | | | |
| Chemical Engineering & Chemistry | Quantum Espresso | | | | |
| Chemical Engineering & Chemistry | Turbomole | | | | |
| Chemical Engineering & Chemistry | VASP | | | | |
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| Computer Science | Boost | | | | |
| Computer Science | Caffe | | | | |
| Computer Science | Darshan | | | | |
| Computer Science | Horovod | | | | |
| Computer Science | PAPI | | | | |
| Computer Science | TensorFlow | | | | |
| Computer Science | Torch | | | | |
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| Earth Sciences | NCL/NCARG | | | | |
| Earth Sciences | QGIS | | | | |
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| Mathematics & Statistics | BLAS | | | | |
| Mathematics & Statistics | FFTW | | | | |
| Mathematics & Statistics | Gurobi | | | | |
| Mathematics & Statistics | Hadoop | | | | |
| Mathematics & Statistics | LAPACK | | | | |
| Mathematics & Statistics | MAGMA | | | | |
| Mathematics & Statistics | MATLAB | Commercial | | | |
| Mathematics & Statistics | MKL - Intel Math Kernel Library | Commercial | | | |
| Mathematics & Statistics | Octave | | | | |
| Mathematics & Statistics | PETSc | | | | |
| Mathematics & Statistics | R and Rstudio | | | | |
| Mathematics & Statistics | ScaLAPACK | | | | |
| Mathematics & Statistics | Spark | | | | |
| Mathematics & Statistics | Stata | | | | |
| Mathematics & Statistics | SuiteSparse | | | | |
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| Mechanical Engineering | ABAQUS | Commercial | | | |
| Mechanical Engineering | Altair HyperWorks | Commercial | | | |
| Mechanical Engineering | OpenFOAM | | | | |
| Mechanical Engineering | WARP3D | | | | |
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| Visualization | Blender | | | | |
| Visualization | Connectome Workbench | | | | |
| Visualization | Ncview | | | | |
| Visualization | ParaView | | | | |
| Visualization | Texlive | | | | |
| Visualization | Transmission3d | | | | |
| Visualization | TurboVNC | | | | |
| Visualization | VMD | | | | |
| Visualization | Wine | | | | |
| Visualization | ffmpeg | | | | |
| Visualization | xcpEngine | | | | |